IL_7UPH_164

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GAA*U(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_164 not in the Motif Atlas

Geometric match to IL_7RQB_030

Geometric discrepancy: 0.293

The information below is about IL_7RQB_030

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7UPH|1|I|G|4082
7UPH|1|I|A|4083
7UPH|1|I|A|4084
*
7UPH|1|I|U|4098
7UPH|1|I|PSU|4099
7UPH|1|I|C|4100

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain K

50S ribosomal protein L2