IL_7UPH_165

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

7UPH|1|I|A|4096

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_165 not in the Motif Atlas

Geometric match to IL_1DUQ_002

Geometric discrepancy: 0.2793

The information below is about IL_1DUQ_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7UPH|1|I|C|4085
7UPH|1|I|G|4086
*
7UPH|1|I|C|4095
7UPH|1|I|A|4096
7UPH|1|I|G|4097

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain K

50S ribosomal protein L2