IL_7UPH_190

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

(5MC)ACA*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_190 not in the Motif Atlas

Geometric match to IL_8C3A_473

Geometric discrepancy: 0.2644

The information below is about IL_8C3A_473

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

7UPH|1|I|5MC|1406
7UPH|1|I|A|1407
7UPH|1|I|C|1408
7UPH|1|I|A|1409
*
7UPH|1|I|U|4394
7UPH|1|I|G|4395
7UPH|1|I|A|4396
7UPH|1|I|A|4397
7UPH|1|I|G|4398

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain g

30S ribosomal protein S12