IL_7UPH_191

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UAGC*GCG

Length

7 nucleotides

Bulged bases

7UPH|1|I|A|1440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_191 not in the Motif Atlas

Geometric match to IL_4V88_457

Geometric discrepancy: 0.3424

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7UPH|1|I|U|1439
7UPH|1|I|A|1440
7UPH|1|I|G|1441
7UPH|1|I|C|1442
*
7UPH|1|I|G|4363
7UPH|1|I|C|4364
7UPH|1|I|G|4365

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain G

30S ribosomal protein S20

Chain o

50S ribosomal protein L19