3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
GGAG*UGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UPH_195 not in the Motif Atlas
Geometric match to IL_1SAQ_002
Geometric discrepancy: 0.2301
The information below is about IL_1SAQ_002
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.13
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

7UPH|1|I|G|2036
7UPH|1|I|G|2037
7UPH|1|I|A|2038
7UPH|1|I|G|2039
*
7UPH|1|I|U|2054
7UPH|1|I|G|2055
7UPH|1|I|A|2056
7UPH|1|I|C|2057

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain R
50S ribosomal protein L13
Chain p
50S ribosomal protein L20

Coloring options:


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