IL_7UPH_198

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_198 not in the Motif Atlas

Geometric match to IL_1T0E_002

Geometric discrepancy: 0.3142

The information below is about IL_1T0E_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

7UPH|1|I|U|2370
7UPH|1|I|U|2371
7UPH|1|I|U|2372
*
7UPH|1|I|A|2399
7UPH|1|I|U|2400
7UPH|1|I|G|2401

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain U

50S ribosomal protein L16