IL_7UPH_200

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_200 not in the Motif Atlas

Geometric match to IL_1U9S_007

Geometric discrepancy: 0.1989

The information below is about IL_1U9S_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7UPH|1|I|C|2661
7UPH|1|I|G|2662
7UPH|1|I|A|2663
*
7UPH|1|I|U|2674
7UPH|1|I|U|2675
7UPH|1|I|G|2676

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain y

50S ribosomal protein L30