3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
CUUUGAAG*UGGAG
Length
13 nucleotides
Bulged bases
7UPH|1|I|U|3625, 7UPH|1|I|U|3626, 7UPH|1|I|A|3652
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UPH_224 not in the Motif Atlas
Geometric match to IL_5J7L_330
Geometric discrepancy: 0.3518
The information below is about IL_5J7L_330
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

7UPH|1|I|C|3623
7UPH|1|I|U|3624
7UPH|1|I|U|3625
7UPH|1|I|U|3626
7UPH|1|I|G|3627
7UPH|1|I|A|3628
7UPH|1|I|A|3629
7UPH|1|I|G|3630
*
7UPH|1|I|U|3649
7UPH|1|I|G|3650
7UPH|1|I|G|3651
7UPH|1|I|A|3652
7UPH|1|I|G|3653

Current chains

Chain I
Tethered rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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