IL_7UPH_224

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7UPH|1|I|U|3625, 7UPH|1|I|U|3626, 7UPH|1|I|A|3652

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_224 not in the Motif Atlas

Geometric match to IL_5J7L_330

Geometric discrepancy: 0.3518

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7UPH|1|I|C|3623
7UPH|1|I|U|3624
7UPH|1|I|U|3625
7UPH|1|I|U|3626
7UPH|1|I|G|3627
7UPH|1|I|A|3628
7UPH|1|I|A|3629
7UPH|1|I|G|3630
*
7UPH|1|I|U|3649
7UPH|1|I|G|3650
7UPH|1|I|G|3651
7UPH|1|I|A|3652
7UPH|1|I|G|3653

Current chains

Chain I

Tethered rRNA

Nearby chains