IL_7UQB_023

3D structure

PDB id

7UQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UQB_023 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.1378

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7UQB|1|1|G|725
7UQB|1|1|G|726
7UQB|1|1|G|727
7UQB|1|1|G|728
*
7UQB|1|1|U|741
7UQB|1|1|G|742
7UQB|1|1|C|743
7UQB|1|1|A|744
7UQB|1|1|C|745

Current chains

Chain 1

25S rRNA

Nearby chains

Chain Q

60S ribosomal protein L18-A