IL_7UQB_071
3D structure
- PDB id
- 7UQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 7UQB|1|1|G|2335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UQB_071 not in the Motif Atlas
- Homologous match to IL_5TBW_077
- Geometric discrepancy: 0.101
- The information below is about IL_5TBW_077
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_06455.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
7UQB|1|1|A|1901
7UQB|1|1|G|1902
7UQB|1|1|U|1903
7UQB|1|1|C|1904
7UQB|1|1|G|1905
7UQB|1|1|G|1906
*
7UQB|1|1|C|2333
7UQB|1|1|U|2334
7UQB|1|1|G|2335
7UQB|1|1|U|2336
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain I
- Bud site selection protein 20
- Chain V
- 60S ribosomal protein L23-A
- Chain m
- Nucleolar GTP-binding protein 2
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