IL_7UQB_078

3D structure

PDB id

7UQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

UGC*GUAAA

Length

8 nucleotides

Bulged bases

7UQB|1|1|A|2243

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UQB_078 not in the Motif Atlas

Geometric match to IL_5TBW_091

Geometric discrepancy: 0.3758

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7UQB|1|1|U|2200
7UQB|1|1|G|2201
7UQB|1|1|C|2202
*
7UQB|1|1|G|2240
7UQB|1|1|U|2241
7UQB|1|1|A|2242
7UQB|1|1|A|2243
7UQB|1|1|A|2244

Current chains

Chain 1

25S rRNA

Nearby chains

Chain m

Nucleolar GTP-binding protein 2