IL_7UQB_119

3D structure

PDB id

7UQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UQB_119 not in the Motif Atlas

Geometric match to IL_4UYK_003

Geometric discrepancy: 0.1151

The information below is about IL_4UYK_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7UQB|1|1|C|3235
7UQB|1|1|U|3236
7UQB|1|1|U|3237
7UQB|1|1|G|3238
*
7UQB|1|1|C|3249
7UQB|1|1|U|3250
7UQB|1|1|U|3251
7UQB|1|1|G|3252

Current chains

Chain 1

25S rRNA

Nearby chains

Chain O

60S ribosomal protein L16-A

Chain z

UPF0642 protein YBL028C