IL_7UQB_142
3D structure
- PDB id
- 7UQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 7UQB|1|1|A|933
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UQB_142 not in the Motif Atlas
- Homologous match to IL_8P9A_256
- Geometric discrepancy: 0.4626
- The information below is about IL_8P9A_256
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
7UQB|1|1|OMG|805
7UQB|1|1|A|806
7UQB|1|1|A2M|807
7UQB|1|1|A|808
7UQB|1|1|G|809
*
7UQB|1|1|C|931
7UQB|1|1|U|932
7UQB|1|1|A|933
7UQB|1|1|G|934
7UQB|1|1|U|935
7UQB|1|1|A|936
7UQB|1|1|G|937
7UQB|1|1|C|938
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain j
- 60S ribosomal protein L37-A
- Chain m
- Nucleolar GTP-binding protein 2
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