IL_7UQB_156

3D structure

PDB id

7UQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

ACACA*UUGCGU

Length

11 nucleotides

Bulged bases

7UQB|1|1|U|3283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UQB_156 not in the Motif Atlas

Homologous match to IL_8P9A_349

Geometric discrepancy: 0.4251

The information below is about IL_8P9A_349

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

7UQB|1|1|A|3163
7UQB|1|1|C|3164
7UQB|1|1|A|3165
7UQB|1|1|C|3166
7UQB|1|1|A|3167
*
7UQB|1|1|U|3282
7UQB|1|1|U|3283
7UQB|1|1|G|3284
7UQB|1|1|C|3285
7UQB|1|1|G|3286
7UQB|1|1|U|3287

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 9

Ribosome biogenesis protein ALB1

Chain z

UPF0642 protein YBL028C