IL_7UQZ_060

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

7UQZ|1|1|U|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UQZ_060 not in the Motif Atlas

Homologous match to IL_5TBW_066

Geometric discrepancy: 0.139

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7UQZ|1|1|U|1627
7UQZ|1|1|C|1628
7UQZ|1|1|U|1629
7UQZ|1|1|U|1630
7UQZ|1|1|C|1631
*
7UQZ|1|1|G|1811
7UQZ|1|1|G|1812
7UQZ|1|1|A|1813
7UQZ|1|1|A|1814
7UQZ|1|1|U|1815
7UQZ|1|1|A|1816

Current chains

Chain 1

25S rRNA

Nearby chains

Chain Z

60S ribosomal protein L27-A

Chain n

Pescadillo homolog

Chain q

Ribosome biogenesis protein NOP53