IL_7UQZ_077
3D structure
- PDB id
- 7UQZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 7UQZ|1|1|U|2159, 7UQZ|1|1|U|2175, 7UQZ|1|1|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UQZ_077 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.0699
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7UQZ|1|1|C|2156
7UQZ|1|1|G|2157
7UQZ|1|1|A|2158
7UQZ|1|1|U|2159
7UQZ|1|1|G|2160
7UQZ|1|1|G|2161
*
7UQZ|1|1|U|2173
7UQZ|1|1|G|2174
7UQZ|1|1|U|2175
7UQZ|1|1|U|2176
7UQZ|1|1|G|2177
7UQZ|1|1|A|2178
7UQZ|1|1|C|2179
7UQZ|1|1|G|2180
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain p
- 60S ribosomal protein L43-A
Coloring options: