IL_7UQZ_083

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GAG*C(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UQZ_083 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.2199

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7UQZ|1|1|G|2251
7UQZ|1|1|A|2252
7UQZ|1|1|G|2253
*
7UQZ|1|1|C|2263
7UQZ|1|1|PSU|2264
7UQZ|1|1|C|2265

Current chains

Chain 1

25S rRNA

Nearby chains

Chain v

Ribosome production factor 2 homolog

Chain x

RSA4 isoform 1