IL_7UQZ_087
3D structure
- PDB id
- 7UQZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- UU*ACCA
- Length
- 6 nucleotides
- Bulged bases
- 7UQZ|1|1|C|2809, 7UQZ|1|1|C|2810
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UQZ_087 not in the Motif Atlas
- Geometric match to IL_6JXM_001
- Geometric discrepancy: 0.2681
- The information below is about IL_6JXM_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_84476.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
7UQZ|1|1|U|2410
7UQZ|1|1|U|2411
*
7UQZ|1|1|A|2808
7UQZ|1|1|C|2809
7UQZ|1|1|C|2810
7UQZ|1|1|A|2811
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
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