IL_7UQZ_092

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GCAC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UQZ_092 not in the Motif Atlas

Geometric match to IL_6DTD_001

Geometric discrepancy: 0.3719

The information below is about IL_6DTD_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_25872.4

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

7UQZ|1|1|G|2624
7UQZ|1|1|C|2625
7UQZ|1|1|A|2626
7UQZ|1|1|C|2627
*
7UQZ|1|1|G|2651
7UQZ|1|1|U|2652
7UQZ|1|1|C|2653
7UQZ|1|1|C|2654

Current chains

Chain 1

25S rRNA

Nearby chains

Chain J

60S ribosomal protein L11-A

Chain T

60S ribosomal protein L21-A

Chain w

Ribosome biogenesis regulatory protein