IL_7UQZ_125

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UQZ_125 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.1507

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7UQZ|1|1|A|3342
7UQZ|1|1|G|3343
7UQZ|1|1|A|3344
7UQZ|1|1|G|3345
*
7UQZ|1|1|C|3360
7UQZ|1|1|G|3361
7UQZ|1|1|A|3362
7UQZ|1|1|U|3363

Current chains

Chain 1

25S rRNA

Nearby chains

Chain R

60S ribosomal protein L19-A