IL_7UQZ_135

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

AGUG*CAU

Length

7 nucleotides

Bulged bases

7UQZ|1|3|U|86

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UQZ_135 not in the Motif Atlas

Homologous match to IL_5TBW_378

Geometric discrepancy: 0.512

The information below is about IL_5TBW_378

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7UQZ|1|3|A|84
7UQZ|1|3|G|85
7UQZ|1|3|U|86
7UQZ|1|3|G|87
*
7UQZ|1|3|C|94
7UQZ|1|3|A|95
7UQZ|1|3|U|96

Current chains

Chain 3

5S rRNA

Nearby chains