IL_7UQZ_138

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

AU*A(PSU)U

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UQZ_138 not in the Motif Atlas

Geometric match to IL_8VTW_023

Geometric discrepancy: 0.3702

The information below is about IL_8VTW_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7UQZ|1|1|A|755
7UQZ|1|1|U|756
*
7UQZ|1|1|A|775
7UQZ|1|1|PSU|776
7UQZ|1|1|U|777

Current chains

Chain 1

25S rRNA

Nearby chains