RNA 3D Hub //

Motif IL_68541.1 Version IL_68541.1 of this group appears in releases 3.90 to 3.90

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-53-4
1 IL_5J7L_2675J7L0.83291Other ILDA LSU rRNAA844A845||AU847||A*A933U934cWWcWW
2 IL_7A0S_0247A0S0.63120X LSU rRNAU942U943A944*U860G861cWWcWW
3 IL_5IBB_3405IBB0.33610Single base bend1L tRNAG63U64C65*G50C51cWWcWW
4 IL_5J7L_2665J7L0.13730Single stack bendDA LSU rRNAG940A941G942*C837C838cWWncWW
5 IL_8VTW_0238VTW0.15420Single stack bend (H)1A LSU rRNAG940A941G942*C837C838cWWcWW
6 IL_4WF9_0284WF90.14470Single stack bendX LSU rRNAG984A985G986*C882C883cWWcWW
7 IL_7A0S_0227A0S0.00000Single stack bendX LSU rRNAG951A952G953*C850C851cWWcWW
8 IL_3MOJ_0043MOJ0.26370Single stack bendA LSU rRNAC2540A2541A2542*U2522G2523cWWcWW
9 IL_6FZ0_0016FZ00.44930Single stack bendASAM-V riboswitchC46U47A48*U20G21cWWcWW
10 IL_2QWY_0082QWY0.47240Single stack bendCSAM-II riboswitchC43U44A45*U21G22cWWcWW
11 IL_3WBM_0043WBM0.81320Other ILY+XRNA (25-MER)G2U3A4*U23C24cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAG*CC4
CUA*UG2
AU*AAUU1
UUA*UG1
GUC*GC1
CAA*UG1
GUA*UC1
Non-Watson-Crick part of the motif
SequenceCounts
U*5
A*5
*AU1

Release history

Release3.90
Date2024-11-06
StatusNew id, > 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Single stack bend (6)
  • Other IL (2)
  • Single base bend (1)
  • (1)
  • Single stack bend (H) (1)
    • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.08 | Avg 0.50 | Max 0.90
    Help

    Coloring options:

    IL_5J7L_267:IL_5J7L_267 = 0IL_5J7L_267:IL_7A0S_024 = 0.6852IL_5J7L_267:IL_5IBB_340 = 0.7522IL_5J7L_267:IL_5J7L_266 = 0.8504IL_5J7L_267:IL_8VTW_023 = 0.8627IL_5J7L_267:IL_4WF9_028 = 0.8687IL_5J7L_267:IL_7A0S_022 = 0.8329IL_5J7L_267:IL_3MOJ_004 = 0.8886IL_5J7L_267:IL_6FZ0_001 = 0.7018IL_5J7L_267:IL_2QWY_008 = 0.7221IL_5J7L_267:IL_3WBM_004 = 0.8965IL_7A0S_024:IL_5J7L_267 = 0.6852IL_7A0S_024:IL_7A0S_024 = 0IL_7A0S_024:IL_5IBB_340 = 0.6166IL_7A0S_024:IL_5J7L_266 = 0.6351IL_7A0S_024:IL_8VTW_023 = 0.661IL_7A0S_024:IL_4WF9_028 = 0.6515IL_7A0S_024:IL_7A0S_022 = 0.6312IL_7A0S_024:IL_3MOJ_004 = 0.7247IL_7A0S_024:IL_6FZ0_001 = 0.7589IL_7A0S_024:IL_2QWY_008 = 0.8056IL_7A0S_024:IL_3WBM_004 = 0.847IL_5IBB_340:IL_5J7L_267 = 0.7522IL_5IBB_340:IL_7A0S_024 = 0.6166IL_5IBB_340:IL_5IBB_340 = 0IL_5IBB_340:IL_5J7L_266 = 0.3447IL_5IBB_340:IL_8VTW_023 = 0.3695IL_5IBB_340:IL_4WF9_028 = 0.398IL_5IBB_340:IL_7A0S_022 = 0.3361IL_5IBB_340:IL_3MOJ_004 = 0.4383IL_5IBB_340:IL_6FZ0_001 = 0.3908IL_5IBB_340:IL_2QWY_008 = 0.4098IL_5IBB_340:IL_3WBM_004 = 0.8202IL_5J7L_266:IL_5J7L_267 = 0.8504IL_5J7L_266:IL_7A0S_024 = 0.6351IL_5J7L_266:IL_5IBB_340 = 0.3447IL_5J7L_266:IL_5J7L_266 = 0IL_5J7L_266:IL_8VTW_023 = 0.078IL_5J7L_266:IL_4WF9_028 = 0.1335IL_5J7L_266:IL_7A0S_022 = 0.1373IL_5J7L_266:IL_3MOJ_004 = 0.3447IL_5J7L_266:IL_6FZ0_001 = 0.5009IL_5J7L_266:IL_2QWY_008 = 0.5259IL_5J7L_266:IL_3WBM_004 = 0.8307IL_8VTW_023:IL_5J7L_267 = 0.8627IL_8VTW_023:IL_7A0S_024 = 0.661IL_8VTW_023:IL_5IBB_340 = 0.3695IL_8VTW_023:IL_5J7L_266 = 0.078IL_8VTW_023:IL_8VTW_023 = 0IL_8VTW_023:IL_4WF9_028 = 0.106IL_8VTW_023:IL_7A0S_022 = 0.1542IL_8VTW_023:IL_3MOJ_004 = 0.3419IL_8VTW_023:IL_6FZ0_001 = 0.5138IL_8VTW_023:IL_2QWY_008 = 0.5314IL_8VTW_023:IL_3WBM_004 = 0.8265IL_4WF9_028:IL_5J7L_267 = 0.8687IL_4WF9_028:IL_7A0S_024 = 0.6515IL_4WF9_028:IL_5IBB_340 = 0.398IL_4WF9_028:IL_5J7L_266 = 0.1335IL_4WF9_028:IL_8VTW_023 = 0.106IL_4WF9_028:IL_4WF9_028 = 0IL_4WF9_028:IL_7A0S_022 = 0.1447IL_4WF9_028:IL_3MOJ_004 = 0.309IL_4WF9_028:IL_6FZ0_001 = 0.5421IL_4WF9_028:IL_2QWY_008 = 0.5617IL_4WF9_028:IL_3WBM_004 = 0.8601IL_7A0S_022:IL_5J7L_267 = 0.8329IL_7A0S_022:IL_7A0S_024 = 0.6312IL_7A0S_022:IL_5IBB_340 = 0.3361IL_7A0S_022:IL_5J7L_266 = 0.1373IL_7A0S_022:IL_8VTW_023 = 0.1542IL_7A0S_022:IL_4WF9_028 = 0.1447IL_7A0S_022:IL_7A0S_022 = 0IL_7A0S_022:IL_3MOJ_004 = 0.2637IL_7A0S_022:IL_6FZ0_001 = 0.4493IL_7A0S_022:IL_2QWY_008 = 0.4724IL_7A0S_022:IL_3WBM_004 = 0.8132IL_3MOJ_004:IL_5J7L_267 = 0.8886IL_3MOJ_004:IL_7A0S_024 = 0.7247IL_3MOJ_004:IL_5IBB_340 = 0.4383IL_3MOJ_004:IL_5J7L_266 = 0.3447IL_3MOJ_004:IL_8VTW_023 = 0.3419IL_3MOJ_004:IL_4WF9_028 = 0.309IL_3MOJ_004:IL_7A0S_022 = 0.2637IL_3MOJ_004:IL_3MOJ_004 = 0IL_3MOJ_004:IL_6FZ0_001 = 0.4463IL_3MOJ_004:IL_2QWY_008 = 0.4497IL_3MOJ_004:IL_3WBM_004 = 0.7594IL_6FZ0_001:IL_5J7L_267 = 0.7018IL_6FZ0_001:IL_7A0S_024 = 0.7589IL_6FZ0_001:IL_5IBB_340 = 0.3908IL_6FZ0_001:IL_5J7L_266 = 0.5009IL_6FZ0_001:IL_8VTW_023 = 0.5138IL_6FZ0_001:IL_4WF9_028 = 0.5421IL_6FZ0_001:IL_7A0S_022 = 0.4493IL_6FZ0_001:IL_3MOJ_004 = 0.4463IL_6FZ0_001:IL_6FZ0_001 = 0IL_6FZ0_001:IL_2QWY_008 = 0.1076IL_6FZ0_001:IL_3WBM_004 = 0.7869IL_2QWY_008:IL_5J7L_267 = 0.7221IL_2QWY_008:IL_7A0S_024 = 0.8056IL_2QWY_008:IL_5IBB_340 = 0.4098IL_2QWY_008:IL_5J7L_266 = 0.5259IL_2QWY_008:IL_8VTW_023 = 0.5314IL_2QWY_008:IL_4WF9_028 = 0.5617IL_2QWY_008:IL_7A0S_022 = 0.4724IL_2QWY_008:IL_3MOJ_004 = 0.4497IL_2QWY_008:IL_6FZ0_001 = 0.1076IL_2QWY_008:IL_2QWY_008 = 0IL_2QWY_008:IL_3WBM_004 = 0.5366IL_3WBM_004:IL_5J7L_267 = 0.8965IL_3WBM_004:IL_7A0S_024 = 0.847IL_3WBM_004:IL_5IBB_340 = 0.8202IL_3WBM_004:IL_5J7L_266 = 0.8307IL_3WBM_004:IL_8VTW_023 = 0.8265IL_3WBM_004:IL_4WF9_028 = 0.8601IL_3WBM_004:IL_7A0S_022 = 0.8132IL_3WBM_004:IL_3MOJ_004 = 0.7594IL_3WBM_004:IL_6FZ0_001 = 0.7869IL_3WBM_004:IL_2QWY_008 = 0.5366IL_3WBM_004:IL_3WBM_004 = 0IL_5J7L_267IL_7A0S_024IL_5IBB_340IL_5J7L_266IL_8VTW_023IL_4WF9_028IL_7A0S_022IL_3MOJ_004IL_6FZ0_001IL_2QWY_008IL_3WBM_004Discrepancy0.000.200.400.600.80
    Copyright 2025 BGSU RNA group. Page generated in 1.0721 s