IL_7UQZ_153

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

C(OMC)AG*CG

Length

6 nucleotides

Bulged bases

7UQZ|1|1|OMC|2197

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UQZ_153 not in the Motif Atlas

Homologous match to IL_8P9A_312

Geometric discrepancy: 0.4883

The information below is about IL_8P9A_312

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7UQZ|1|1|C|2196
7UQZ|1|1|OMC|2197
7UQZ|1|1|A|2198
7UQZ|1|1|G|2199
*
7UQZ|1|1|C|2245
7UQZ|1|1|G|2246

Current chains

Chain 1

25S rRNA

Nearby chains

Chain m

Nucleolar GTP-binding protein 2