IL_7UVV_016

3D structure

PDB id

7UVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

7UVV|1|A|G|799, 7UVV|1|A|G|803

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UVV_016 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1066

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7UVV|1|A|G|672
7UVV|1|A|A|673
7UVV|1|A|A|674
7UVV|1|A|A|675
7UVV|1|A|C|676
*
7UVV|1|A|G|797
7UVV|1|A|U|798
7UVV|1|A|G|799
7UVV|1|A|A|800
7UVV|1|A|U|801
7UVV|1|A|A|802
7UVV|1|A|G|803
7UVV|1|A|C|804

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain K

50S ribosomal protein L15