IL_7UVW_007

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

UCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UVW_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0895

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7UVW|1|A|U|246
7UVW|1|A|C|247
7UVW|1|A|A|248
7UVW|1|A|G|249
7UVW|1|A|U|250
7UVW|1|A|A|251
7UVW|1|A|G|252
*
7UVW|1|A|C|260
7UVW|1|A|G|261
7UVW|1|A|A|262
7UVW|1|A|A|263
7UVW|1|A|C|264
7UVW|1|A|G|265

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain K

50S ribosomal protein L15