IL_7UVW_017

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

7UVW|1|A|G|799, 7UVW|1|A|G|803

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UVW_017 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1063

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7UVW|1|A|G|672
7UVW|1|A|A|673
7UVW|1|A|A|674
7UVW|1|A|A|675
7UVW|1|A|C|676
*
7UVW|1|A|G|797
7UVW|1|A|U|798
7UVW|1|A|G|799
7UVW|1|A|A|800
7UVW|1|A|U|801
7UVW|1|A|A|802
7UVW|1|A|G|803
7UVW|1|A|C|804

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain K

50S ribosomal protein L15