IL_7UVW_043

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7UVW|1|A|U|1206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UVW_043 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0796

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

7UVW|1|A|C|1203
7UVW|1|A|G|1204
7UVW|1|A|A|1205
7UVW|1|A|U|1206
7UVW|1|A|G|1207
7UVW|1|A|A|1208
7UVW|1|A|A|1209
7UVW|1|A|G|1210
*
7UVW|1|A|U|1229
7UVW|1|A|G|1230
7UVW|1|A|G|1231
7UVW|1|A|A|1232
7UVW|1|A|G|1233

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L20