IL_7UVW_121

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

GGACAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7UVW|1|a|U|169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UVW_121 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1077

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7UVW|1|a|G|143
7UVW|1|a|G|144
7UVW|1|a|A|145
7UVW|1|a|C|146
7UVW|1|a|A|147
7UVW|1|a|A|148
7UVW|1|a|C|149
*
7UVW|1|a|G|164
7UVW|1|a|C|165
7UVW|1|a|U|166
7UVW|1|a|A|167
7UVW|1|a|A|168
7UVW|1|a|U|169
7UVW|1|a|A|170
7UVW|1|a|C|171

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20