IL_7UVZ_017

3D structure

PDB id

7UVZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

7UVZ|1|A|G|799, 7UVZ|1|A|G|803

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UVZ_017 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1012

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7UVZ|1|A|G|672
7UVZ|1|A|A|673
7UVZ|1|A|A|674
7UVZ|1|A|A|675
7UVZ|1|A|C|676
*
7UVZ|1|A|G|797
7UVZ|1|A|U|798
7UVZ|1|A|G|799
7UVZ|1|A|A|800
7UVZ|1|A|U|801
7UVZ|1|A|A|802
7UVZ|1|A|G|803
7UVZ|1|A|C|804

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain K

50S ribosomal protein L15