IL_7UVZ_181

3D structure

PDB id

7UVZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UVZ_181 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0983

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7UVZ|1|A|U|1847
7UVZ|1|A|U|1848
7UVZ|1|A|A|1849
7UVZ|1|A|A|1850
7UVZ|1|A|U|1851
7UVZ|1|A|U|1852
7UVZ|1|A|G|1853
7UVZ|1|A|A|1854
7UVZ|1|A|U|1855
7UVZ|1|A|G|1856
*
7UVZ|1|A|U|1878
7UVZ|1|A|U|1879
7UVZ|1|A|G|1880
7UVZ|1|A|A|1881
7UVZ|1|A|U|1882
7UVZ|1|A|C|1883
7UVZ|1|A|G|1884
7UVZ|1|A|A|1885
7UVZ|1|A|A|1886
7UVZ|1|A|G|1887

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain v

Transfer RNA; tRNA