IL_7V08_023

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V08_023 not in the Motif Atlas

Homologous match to IL_5TBW_023

Geometric discrepancy: 0.1609

The information below is about IL_5TBW_023

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7V08|1|1|G|725
7V08|1|1|G|726
7V08|1|1|G|727
7V08|1|1|G|728
*
7V08|1|1|U|741
7V08|1|1|G|742
7V08|1|1|C|743
7V08|1|1|A|744
7V08|1|1|C|745

Current chains

Chain 1

25S rRNA

Nearby chains

Chain Q

60S ribosomal protein L18-A