IL_7V08_038

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

A(PSU)G*UGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V08_038 not in the Motif Atlas

Geometric match to IL_1NBS_006

Geometric discrepancy: 0.2131

The information below is about IL_1NBS_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

7V08|1|1|A|989
7V08|1|1|PSU|990
7V08|1|1|G|991
*
7V08|1|1|U|1058
7V08|1|1|G|1059
7V08|1|1|U|1060

Current chains

Chain 1

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L7-A

Chain T

60S ribosomal protein L21-A