IL_7V08_039

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

CUUG*CGUG

Length

8 nucleotides

Bulged bases

7V08|1|1|U|1071

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V08_039 not in the Motif Atlas

Geometric match to IL_2O3Y_003

Geometric discrepancy: 0.3846

The information below is about IL_2O3Y_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34618.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

6

Unit IDs

7V08|1|1|C|1069
7V08|1|1|U|1070
7V08|1|1|U|1071
7V08|1|1|G|1072
*
7V08|1|1|C|1086
7V08|1|1|G|1087
7V08|1|1|U|1088
7V08|1|1|G|1089

Current chains

Chain 1

25S rRNA

Nearby chains

Chain T

60S ribosomal protein L21-A