IL_7V08_054
3D structure
- PDB id
- 7V08 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.36 Å
Loop
- Sequence
- GUAGU(A2M)(OMG)C*GCGAAAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7V08_054 not in the Motif Atlas
- Geometric match to IL_4V9F_012
- Geometric discrepancy: 0.2699
- The information below is about IL_4V9F_012
- Detailed Annotation
- 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_59724.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
7V08|1|1|G|1444
7V08|1|1|U|1445
7V08|1|1|A|1446
7V08|1|1|G|1447
7V08|1|1|U|1448
7V08|1|1|A2M|1449
7V08|1|1|OMG|1450
7V08|1|1|C|1451
*
7V08|1|1|G|2353
7V08|1|1|C|2354
7V08|1|1|G|2355
7V08|1|1|A|2356
7V08|1|1|A|2357
7V08|1|1|A|2358
7V08|1|1|C|2359
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain b
- Nucleolar GTP-binding protein 1
Coloring options: