IL_7V08_065

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

7V08|1|1|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V08_065 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.0538

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

7V08|1|1|U|1694
7V08|1|1|U|1695
7V08|1|1|A|1696
7V08|1|1|A|1697
7V08|1|1|C|1698
*
7V08|1|1|G|1747
7V08|1|1|G|1748
7V08|1|1|A|1749
7V08|1|1|A|1750
7V08|1|1|G|1751
7V08|1|1|A|1752

Current chains

Chain 1

25S rRNA

Nearby chains

Chain g

60S ribosomal protein L34-A

Chain k

RPL38 isoform 1