IL_7V08_082

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V08_082 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1358

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7V08|1|1|U|2211
7V08|1|1|C|2212
7V08|1|1|A|2213
7V08|1|1|A|2214
7V08|1|1|A|2215
7V08|1|1|G|2216
7V08|1|1|U|2217
*
7V08|1|1|A|2228
7V08|1|1|A|2229
7V08|1|1|C|2230
7V08|1|1|C|2231
7V08|1|1|A|2232
7V08|1|1|A|2233
7V08|1|1|G|2234

Current chains

Chain 1

25S rRNA

Nearby chains

Chain i

60S ribosomal protein L36-A