IL_7V08_106
3D structure
- PDB id
- 7V08 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.36 Å
Loop
- Sequence
- CAAU*AGAACG
- Length
- 10 nucleotides
- Bulged bases
- 7V08|1|1|A|3142, 7V08|1|1|C|3143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7V08_106 not in the Motif Atlas
- Homologous match to IL_5TBW_114
- Geometric discrepancy: 0.0761
- The information below is about IL_5TBW_114
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
7V08|1|1|C|3004
7V08|1|1|A|3005
7V08|1|1|A|3006
7V08|1|1|U|3007
*
7V08|1|1|A|3139
7V08|1|1|G|3140
7V08|1|1|A|3141
7V08|1|1|A|3142
7V08|1|1|C|3143
7V08|1|1|G|3144
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 9
- Ribosome biogenesis protein ALB1
- Chain B
- 60S ribosomal protein L3
- Chain O
- 60S ribosomal protein L16-A
- Chain z
- UPF0642 protein YBL028C
Coloring options: