IL_7V08_120

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

7V08|1|1|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V08_120 not in the Motif Atlas

Homologous match to IL_5TBW_126

Geometric discrepancy: 0.1319

The information below is about IL_5TBW_126

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60154.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

7V08|1|1|C|3225
7V08|1|1|A|3226
7V08|1|1|A|3227
7V08|1|1|C|3228
7V08|1|1|G|3229
*
7V08|1|1|U|3258
7V08|1|1|U|3259
7V08|1|1|G|3260

Current chains

Chain 1

25S rRNA

Nearby chains

Chain E

60S ribosomal protein L6-A

Chain M

60S ribosomal protein L14-A

Chain O

60S ribosomal protein L16-A