IL_7V08_127
3D structure
- PDB id
- 7V08 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.36 Å
Loop
- Sequence
- UGUAAG*CUGAG
- Length
- 11 nucleotides
- Bulged bases
- 7V08|1|1|G|3369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7V08_127 not in the Motif Atlas
- Homologous match to IL_5TBW_133
- Geometric discrepancy: 0.0939
- The information below is about IL_5TBW_133
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83162.8
- Basepair signature
- cWW-cWW-tSH-cWW-tHH-L
- Number of instances in this motif group
- 4
Unit IDs
7V08|1|1|U|3332
7V08|1|1|G|3333
7V08|1|1|U|3334
7V08|1|1|A|3335
7V08|1|1|A|3336
7V08|1|1|G|3337
*
7V08|1|1|C|3367
7V08|1|1|U|3368
7V08|1|1|G|3369
7V08|1|1|A|3370
7V08|1|1|G|3371
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain b
- Nucleolar GTP-binding protein 1
- Chain d
- 60S ribosomal protein L31-A
- Chain u
- Ribosome biogenesis protein RLP24
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