IL_7V08_135

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

CC*G(PSU)AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V08_135 not in the Motif Atlas

Homologous match to IL_5TBW_374

Geometric discrepancy: 0.2309

The information below is about IL_5TBW_374

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.2

Basepair signature

cWW-cWW-cWW-R

Number of instances in this motif group

8

Unit IDs

7V08|1|3|C|28
7V08|1|3|C|29
*
7V08|1|3|G|49
7V08|1|3|PSU|50
7V08|1|3|A|51
7V08|1|3|G|52

Current chains

Chain 3

5S rRNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain J

60S ribosomal protein L11-A