IL_7V2L_018

3D structure

PDB id

7V2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V2L_018 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.0975

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7V2L|1|A|G|445
7V2L|1|A|A|446
7V2L|1|A|A|447
7V2L|1|A|A|448
7V2L|1|A|C|449
7V2L|1|A|C|450
*
7V2L|1|A|G|462
7V2L|1|A|A|463
7V2L|1|A|C|464
7V2L|1|A|U|465
7V2L|1|A|G|466
7V2L|1|A|A|467
7V2L|1|A|C|468

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16