IL_7V2L_021

3D structure

PDB id

7V2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

7V2L|1|A|A|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V2L_021 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.0955

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

7V2L|1|A|C|553
7V2L|1|A|G|554
7V2L|1|A|U|555
7V2L|1|A|A|556
7V2L|1|A|A|557
7V2L|1|A|A|558
7V2L|1|A|G|559
*
7V2L|1|A|C|858
7V2L|1|A|G|859

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S5

Chain L

30S ribosomal protein S12

Chain Q

30S ribosomal protein S17