3D structure

PDB id
7V2L (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophilus 30S ribosome with KsgA, class K1k2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CGGGAG*CAG
Length
9 nucleotides
Bulged bases
7V2L|1|A|G|1425, 7V2L|1|A|G|1426, 7V2L|1|A|A|1427
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7V2L_056 not in the Motif Atlas
Geometric match to IL_7RQB_082
Geometric discrepancy: 0.353
The information below is about IL_7RQB_082
Detailed Annotation
Isolated tHS basepair with bulges
Broad Annotation
No text annotation
Motif group
IL_38958.7
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
15

Unit IDs

7V2L|1|A|C|1423
7V2L|1|A|G|1424
7V2L|1|A|G|1425
7V2L|1|A|G|1426
7V2L|1|A|A|1427
7V2L|1|A|G|1428
*
7V2L|1|A|C|1437
7V2L|1|A|A|1438
7V2L|1|A|G|1439

Current chains

Chain A
16s ribosomal RNA

Nearby chains

Chain T
30S ribosomal protein S20

Coloring options:


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