IL_7V2L_056
3D structure
- PDB id
- 7V2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophilus 30S ribosome with KsgA, class K1k2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGGGAG*CAG
- Length
- 9 nucleotides
- Bulged bases
- 7V2L|1|A|G|1425, 7V2L|1|A|G|1426, 7V2L|1|A|A|1427
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7V2L_056 not in the Motif Atlas
- Geometric match to IL_7RQB_082
- Geometric discrepancy: 0.353
- The information below is about IL_7RQB_082
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.7
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7V2L|1|A|C|1423
7V2L|1|A|G|1424
7V2L|1|A|G|1425
7V2L|1|A|G|1426
7V2L|1|A|A|1427
7V2L|1|A|G|1428
*
7V2L|1|A|C|1437
7V2L|1|A|A|1438
7V2L|1|A|G|1439
Current chains
- Chain A
- 16s ribosomal RNA
Nearby chains
- Chain T
- 30S ribosomal protein S20
Coloring options: