IL_7V2M_009
3D structure
- PDB id
- 7V2M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophilus 30S ribosome with KsgA, class K1k4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GACAAC*GCUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 7V2M|1|A|U|168
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7V2M_009 not in the Motif Atlas
- Homologous match to IL_4LFB_009
- Geometric discrepancy: 0.2526
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_00680.1
- Basepair signature
- cWW-L-R-tWH-L-R-L-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7V2M|1|A|G|143
7V2M|1|A|A|144
7V2M|1|A|C|145
7V2M|1|A|A|146
7V2M|1|A|A|147
7V2M|1|A|C|148
*
7V2M|1|A|G|163
7V2M|1|A|C|164
7V2M|1|A|U|165
7V2M|1|A|A|166
7V2M|1|A|A|167
7V2M|1|A|U|168
7V2M|1|A|C|169
Current chains
- Chain A
- 16s ribosomal RNA
Nearby chains
- Chain T
- 30S ribosomal protein S20
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