IL_7V2M_011
3D structure
- PDB id
- 7V2M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophilus 30S ribosome with KsgA, class K1k4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 7V2M|1|A|U|240, 7V2M|1|A|C|276
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7V2M_011 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.0938
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7V2M|1|A|C|238
7V2M|1|A|A|239
7V2M|1|A|U|240
7V2M|1|A|C|241
7V2M|1|A|A|242
7V2M|1|A|G|243
*
7V2M|1|A|C|273
7V2M|1|A|G|274
7V2M|1|A|A|275
7V2M|1|A|C|276
7V2M|1|A|G|277
7V2M|1|A|A|278
7V2M|1|A|C|279
7V2M|1|A|G|280
Current chains
- Chain A
- 16s ribosomal RNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain Q
- 30S ribosomal protein S17
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