IL_7V2M_018

3D structure

PDB id

7V2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V2M_018 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.1243

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7V2M|1|A|G|445
7V2M|1|A|A|446
7V2M|1|A|A|447
7V2M|1|A|A|448
7V2M|1|A|C|449
7V2M|1|A|C|450
*
7V2M|1|A|G|462
7V2M|1|A|A|463
7V2M|1|A|C|464
7V2M|1|A|U|465
7V2M|1|A|G|466
7V2M|1|A|A|467
7V2M|1|A|C|468

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16