3D structure

PDB id
7V2M (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophilus 30S ribosome with KsgA, class K1k4
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UGUAG*UGAGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7V2M_022 not in the Motif Atlas
Homologous match to IL_4LFB_023
Geometric discrepancy: 0.0999
The information below is about IL_4LFB_023
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

7V2M|1|A|U|564
7V2M|1|A|G|565
7V2M|1|A|U|566
7V2M|1|A|A|567
7V2M|1|A|G|568
*
7V2M|1|A|U|741
7V2M|1|A|G|742
7V2M|1|A|A|743
7V2M|1|A|G|744
7V2M|1|A|G|745

Current chains

Chain A
16s ribosomal RNA

Nearby chains

Chain H
30S ribosomal protein S8
Chain L
30S ribosomal protein S12
Chain O
30S ribosomal protein S15
Chain Q
30S ribosomal protein S17

Coloring options:


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