IL_7V2M_045

3D structure

PDB id

7V2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

7V2M|1|A|U|1109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V2M_045 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.1989

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

7V2M|1|A|G|1107
7V2M|1|A|U|1108
7V2M|1|A|U|1109
7V2M|1|A|G|1110
*
7V2M|1|A|C|1128
7V2M|1|A|A|1129
7V2M|1|A|C|1130
7V2M|1|A|U|1131
7V2M|1|A|C|1132

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10