3D structure

PDB id
7V2M (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophilus 30S ribosome with KsgA, class K1k4
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UACAAAG*CAAAAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7V2M_048 not in the Motif Atlas
Homologous match to IL_4LFB_051
Geometric discrepancy: 0.1435
The information below is about IL_4LFB_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09129.2
Basepair signature
cWW-L-R-tWH-L-R-L-tWW-cWW
Number of instances in this motif group
2

Unit IDs

7V2M|1|A|U|1229
7V2M|1|A|A|1230
7V2M|1|A|C|1231
7V2M|1|A|A|1232
7V2M|1|A|A|1233
7V2M|1|A|A|1234
7V2M|1|A|G|1235
*
7V2M|1|A|C|1266
7V2M|1|A|A|1267
7V2M|1|A|A|1268
7V2M|1|A|A|1269
7V2M|1|A|A|1270
7V2M|1|A|A|1271
7V2M|1|A|G|1272

Current chains

Chain A
16s ribosomal RNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14 type Z
Chain V
30S ribosomal protein Thx

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